Scaffold Ga0208669

Basic Information
Taxon OID	3300025099 Open in IMG/M
Scaffold ID	Ga0208669_1006373 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025099 Open in IMG/M

Scaffold ID

Ga0208669_1006373 Open in IMG/M

Source Dataset Name

Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3542
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (72.73%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

3542

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (72.73%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-16.21	Long. (^o)	-76.63	Alt. (m)	Depth (m)	30
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

-16.21

Long. (^o)

-76.63

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006892	Metagenome	362	Y
F015659	Metagenome	253	Y
F016879	Metagenome	244	Y
F017045	Metagenome / Metatranscriptome	243	Y
F017558	Metagenome / Metatranscriptome	240	Y
F020445	Metagenome / Metatranscriptome	224	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208669_100637311	F017558	AGG	MFFIIFKNKNNILTSYTNTIFSTEEEATDYAKRSLKRKDTWEVVRYDKENYDKYWYK
Ga0208669_10063732	F006892	GGAGG	MSDMGIIKPLRDRVRDLEVINEAHQKKNGQLRVEIQDKNKLIEELEEKINNPTKKMREQGEL
Ga0208669_10063733	F015659	AGGAG	MIERSLKDAIQQFRKNIDDSDYANLGAKGKYLTVPYRIKFVRDYFGERMSIQTESTELANGSHKFKANIYIDDKLVSVGESKQMKNSDKEFEKQQTVSIGRGLSILGFFGDELATAEEMEQFLKPQKKEVGLNAVIGVKDKKIEKKKSIKEIADEWISVMQNAAQNETSVGRFEKNLNPLRKEYLSELHQINSDLIQQQRVDQEEVSLHKQITNRKK
Ga0208669_10063734	F020445	AGGA	MSDYDNTAALWKRQPRDTDVAGKKYPHYNGNITVGGKKMNLAAWLNTEKTKEGQPDISLKISEIVAKEEQPF
Ga0208669_10063737	F016879	AGTAG	MNVIKESFFEASFKTIEEFDNAEVAAVSNVSDNAELKIMDIKLDKSLIKTNNKESNDGKEQQSIEKI
Ga0208669_10063738	F017045	AGGA	MMARSNSLLRRYEKLQTLHSEIMRPAKNPGSRQCVHSAKAFKKYIKVYRQIVGVENEDAKFIYSQL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208669_1006373

Overview

Ecosystem & Geography

Associated Families

Sequences