NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208669_1005408

Scaffold Ga0208669_1005408


Overview

Basic Information
Taxon OID3300025099 Open in IMG/M
Scaffold IDGa0208669_1005408 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3914
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (33.33%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-16.21Long. (o)-76.63Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001235Metagenome / Metatranscriptome741Y
F051547Metagenome144N
F060433Metagenome133Y
F071758Metagenome / Metatranscriptome122Y
F102085Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0208669_10054083F001235AGGALPEKLETNENANDMTKKLWEKHQSDEFTAVNNYKEGVCLGCMKVDRAAATIADICGDCAGKKGREPLLAKICDKYYGLCFFCSKYKFNIEQVNGRFCSTCHRRIANITKEYNKKGGFMKTDPFWISMRKKHGKDWKQIMGGYNKSNRK
Ga0208669_10054085F102085N/AMMASSIYIFDSDRMFKAVYREHVDDLEHKMPLIDLYVKGEKLWVVTNSNDQKERPRLDRSIVHFRKGDAKEWIEGDEKLVTHGKIRFNNKKNHLEIFPRFMRKPLLSMRVGRYFGIKEGKCNIDYDKRYYDFKNDRIIFILDEKE
Ga0208669_10054086F071758N/AMDEKCKKCKINKYGYTDGQHSIFICFKCGRYDGISGGDDSFVSKINEEPMLLLIMIKDKKLTPIS
Ga0208669_10054087F060433N/AMEMSSIIETVLIAVILGMGGALYGFFKKMSSTQADLCETVSRLQKTLIILAKAVDRQSNRLHPDTANSDLDDLVKELLDK
Ga0208669_10054088F051547N/AMIDPLLIATLSVIGGAILNTVRGFIGSSESTYDIKKFFGAVIVAVFTGIAVAQTLSLAGLGLIEVILIGLTVGFSVDYAVSKAKKTQ
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