Scaffold Ga0208669_1005186

Overview

Basic Information

• Taxon OID: 3300025099
• Scaffold ID: Ga0208669_1005186
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4033
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (84.21%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.63
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005547	Metagenome	397	Y
F018286	Metagenome	236	Y
F070089	Metagenome	123	Y
F079212	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208669_100518612	F018286	AGGAG	MQMLTTFILVGMIDSFDAHFATVELNTTPASNGGPATAVMPVGAFPCEIYEGKVFYVVKLHEEQDATIVCQKDVEDERRRRKAD
Ga0208669_100518613	F079212	AGGA	MNADEEKLIDSCIESHYNMIRHHRRQIIELSRRKIKDERRMECFDFEIINESGRSSKSEE
Ga0208669_100518615	F070089	N/A	VKVGDLVKLESALNDSMDHYSVEHGLVVQISKTGHDTLSAQVLFNDGETWWVDSGRLEVLSEGR
Ga0208669_100518617	F005547	AGGAG	MKVWVMQGSYEGEMFSSVHFTQKGCALACIADITEFHGIDDDETALSVMNNTYHGETEEYKEPIEWDQEKLKEMSSKDLWKIFSDWTEISWERMSDRSYHIDANAMEIQA