Scaffold Ga0208669_1005035

Overview

Basic Information

• Taxon OID: 3300025099
• Scaffold ID: Ga0208669_1005035
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4103
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (6.25%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.63
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045198	Metagenome / Metatranscriptome	153	Y
F045797	Metagenome / Metatranscriptome	152	Y
F067212	Metagenome	126	Y
F068236	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208669_100503510	F045797	N/A	MRILKTVKEDNCIYIIEDFAGARVSTKWRPYTVGDLPSRFGCIEDGTDKGGIDEWFNYKGFTYVRDER
Ga0208669_100503512	F067212	N/A	MQLHCKLCGKDVTMETEFETRAPYRIINNHMCEAKKAKQEAKAKALEAGFLL
Ga0208669_10050353	F045198	N/A	MKLEAEHIEQIASYMADSLEDHLDTVFWDGISRVLDEFDIDYEDIGDISDEDCEAIVNETRILFAPKNDSL
Ga0208669_10050359	F068236	AGGA	MSEMKDRKFTHEQVVEVGGEYLKCKETGKWISESDVENYEVEMLNIQIQQYYEQEQDKYY