Scaffold Ga0208669_1004511

Overview

Basic Information

• Taxon OID: 3300025099
• Scaffold ID: Ga0208669_1004511
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4404
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.63
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013025	Metagenome / Metatranscriptome	275	Y
F024116	Metagenome / Metatranscriptome	207	Y
F077328	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208669_100451110	F077328	N/A	KTTLQNPSWQECAFKQGKLGAPRWNKDNTKVLVKYELAIADGTHAQVSAISGVTALSHSECLAEMKKDEWSGE
Ga0208669_10045116	F013025	GGA	MKLNTNISIENIVTIIALISSMMLAFGFMQYDIDVMKKDLQLKADKAELGADRKLITYKLDVIMEDIEEIKQTLKERK
Ga0208669_10045119	F024116	AGGA	VSDDLKDYITIIAFLVIVLGGLVLLGSCDSGWSVVGYEV