Scaffold Ga0208669_1002960

Overview

Basic Information

• Taxon OID: 3300025099
• Scaffold ID: Ga0208669_1002960
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5688
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (16.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.63
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000126	Metagenome / Metatranscriptome	2021	Y
F031927	Metagenome	181	Y
F089528	Metagenome	109	Y
F094392	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208669_100296012	F031927	N/A	MSKSIIKSIKQTDYSTIITTNSGIVRTYTFNTIKQNNEFYNSQM
Ga0208669_10029604	F094392	GAG	MKEIDQMLEQWVRNTIIREKFRKIIVKEINKYKTNTNKDG
Ga0208669_10029606	F000126	N/A	MVQRNINMRDFNITRKKGEWYNTKVTDSYGNKYQSYFENAHECSEWIYYIWEKEDWFNSVDSQELLGKAIQQCKEMDSKNPNLRDIL
Ga0208669_10029607	F089528	N/A	MYEALEHWNEYQKKKRAQQEMDKFINKLVKKNGTTKY