Basic Information | |
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Taxon OID | 3300025099 Open in IMG/M |
Scaffold ID | Ga0208669_1002960 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 5688 |
Total Scaffold Genes | 18 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (16.67%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | -16.21 | Long. (o) | -76.63 | Alt. (m) | Depth (m) | 30 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F000126 | Metagenome / Metatranscriptome | 2021 | Y |
F031927 | Metagenome | 181 | Y |
F089528 | Metagenome | 109 | Y |
F094392 | Metagenome | 106 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0208669_100296012 | F031927 | N/A | MSKSIIKSIKQTDYSTIITTNSGIVRTYTFNTIKQNNEFYNSQM |
Ga0208669_10029604 | F094392 | GAG | MKEIDQMLEQWVRNTIIREKFRKIIVKEINKYKTNTNKDG |
Ga0208669_10029606 | F000126 | N/A | MVQRNINMRDFNITRKKGEWYNTKVTDSYGNKYQSYFENAHECSEWIYYIWEKEDWFNSVDSQELLGKAIQQCKEMDSKNPNLRDIL |
Ga0208669_10029607 | F089528 | N/A | MYEALEHWNEYQKKKRAQQEMDKFINKLVKKNGTTKY |
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