Scaffold Ga0208669_1002696

Overview

Basic Information

• Taxon OID: 3300025099
• Scaffold ID: Ga0208669_1002696
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6005
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (66.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.63
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002594	Metagenome / Metatranscriptome	545	Y
F011527	Metagenome	290	Y
F018451	Metagenome	235	Y
F026714	Metagenome	197	N
F056144	Metagenome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208669_100269612	F026714	AGGAG	MADKYKKLTIYVNEEQEKVLKDFDIMAIRKEQFPLLHYTVGLISKRLEETHNRVITDVDPNTCDQSTLQYSSKTIG
Ga0208669_100269613	F056144	AGGAG	MHRSVYRGYDIVEYDTKWRVELDNKMVCMFEKDEGVSGEASCMCEIDRIYRNDQKEIDANIQRVDAQVKLDNNIKKARNNGS
Ga0208669_100269615	F018451	GAG	MAVSKFIDVKSHNPKAVMPKDYKMNKIQHSPKVLQVVDGMLGFEFNGTYIVDPTLDETARFPVSAKTYYKISARDRDRMIKANIKV
Ga0208669_10026962	F011527	N/A	MLVYFQFRRCGYYAKGLVEADSLDAASKALWAEHVGTFKWEDQTNDMPEKANYLTIEEYKYERSSDGKTEPENEVRSQVG
Ga0208669_10026964	F002594	N/A	MAKIPISRLNSAPEEYKANDFNQLIEDLQDMVKVLNSTYPKDQNDERERQVWLLGG