Scaffold Ga0208669_1002666

Overview

Basic Information

• Taxon OID: 3300025099
• Scaffold ID: Ga0208669_1002666
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6039
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.63
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012529	Metagenome / Metatranscriptome	280	Y
F020815	Metagenome	222	N
F028349	Metagenome / Metatranscriptome	192	Y
F087896	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208669_100266610	F087896	AGGAG	MNYKTSQGVELSDDGYTKVTQKKSLGYGWEATLYNNDRLVLTQDATGETLSIPPESTQTLRDIFKSINEEA
Ga0208669_100266613	F012529	AGGAGG	MLEDKTYKVKVGEWNDAVIFVYERHRKCLNPDDKPEDHRWKHWKEVLTVIPVNHDFEDYQDTSGQFHNNVRATVDALAELYAASPDYEMGIEYTMNTHPYINV
Ga0208669_10026667	F028349	GAGG	MKVKTYHKNGKAVQFLGYSDIDASNAAKVVMGEVGDVGYFKPRLGTDEWIYDWIYKKEITDEDLRRVIGK
Ga0208669_10026668	F020815	GGAGG	MRLYMNKQGEWVGTQAAARKIGASMVDVPTDKPNLLKWLNTFTGAIDDAAKEVIDSKPKPGRVTQKAHAWETIRECAQKASIDDMTVALAVYMDRVQDIADKQKETQQ