Scaffold Ga0208669_1002546

Overview

Basic Information

• Taxon OID: 3300025099
• Scaffold ID: Ga0208669_1002546
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6224
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.63
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004747	Metagenome / Metatranscriptome	425	Y
F089508	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208669_10025461	F089508	GGAG	MLANKIIQAYAKKLLTKNQGSGITTLPSQFMAESKAGEIAAILQQAGMPLQQLDDYIRSEADLLKFLNLIKASSEPRVIPGTSAEGRAITEKLFGKKSEVISFKDKIENMKKSGDIVDVDDVKISKKITDRDMFKEANQRLKGPIKKKQDM
Ga0208669_10025465	F004747	GAGG	MDNNKVNYAEVIGRLLMILTGFVLVMLGFITFIHTGEHKVLGILICFAGTVTMFMGVPDH