Scaffold Ga0208669_1002491

Overview

Basic Information

• Taxon OID: 3300025099
• Scaffold ID: Ga0208669_1002491
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6311
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (53.85%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.63
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000379	Metagenome / Metatranscriptome	1211	Y
F024645	Metagenome / Metatranscriptome	205	Y
F062906	Metagenome	130	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208669_100249110	F062906	N/A	MDNPHGGHSVKVGSSGLSKYQTRIGNYQQGNGPDYLVTWPICYIGEQSIVNRLEERIKDTLEHDRLESRLGEWYDNHTAKTIAPKIEEIIQGNHFKIKKVEDKFLPVEYEIGWKTQKKMMEHYQKSHILSEFLVG
Ga0208669_10024913	F024645	N/A	MKQGVEMQKNKKQFYITELNMGIDGLESYTDYSGPFTLNKARNIMEKLMKNPGQWVNPYVMSIRGPRHTNGYGHNTEFYSEREDR
Ga0208669_10024914	F000379	GGAGG	MNKIDYSNKHDIMVGYIDRSDNVVAVETGWVTTPKAITQILMSQYNSKEMAQKLVDSPTLMPIFSKDDYEYVDGFGDVIESNISWHKDNCRKNVGHLFLFMKGTWQYSDNGIDWTPAVEEFKEVA