Scaffold Ga0208669_1001476

Overview

Basic Information

• Taxon OID: 3300025099
• Scaffold ID: Ga0208669_1001476
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8624
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (28.57%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.63
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002902	Metagenome / Metatranscriptome	522	Y
F013197	Metagenome / Metatranscriptome	273	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208669_100147614	F013197	N/A	VYWGNTCQQACIYCGAHYSSTIQQEEKRFEDFEKEGVEISDRWKRNPKIAEHTELLFKWFENHLHKLHKIFVMGGEPFLQKETFRFIEFLEKGSYPDLTLVFFSNHNIEHERFKKWMDRLDVLQKSGRLDKIQIFFSCDALGPEGEYVRTGLDLNVALKNFEYILHHTEFEQGINSALTVTAVPGMPAMVKYINECSKVKPIYWSMMKANQYEIEPREYMYPGIFGAKINDWGLREAVESFDTTSYGHPDSVKVNHKTYMQGIMKEFEQREPMPHRQKQFKIYLDELDRRRSTNWPKIYPQIFDIVKDL
Ga0208669_10014767	F002902	AGGAGG	MAGVAQGNGGKSGTSNGLGIRTRVLNLAKTNMTEAELDAALTYLMAGDVSGTNDAHTIAAVNPLTDSGKFRTGVTDAVQVAIQGTGAATAGSDFGTGSTGVTMSVLADFIASEDVDHE