Scaffold Ga0208669_1001081

Overview

Basic Information

• Taxon OID: 3300025099
• Scaffold ID: Ga0208669_1001081
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10169
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (3.85%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.63
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026406	Metagenome	198	N
F041491	Metagenome	160	Y
F044200	Metagenome	155	Y
F059454	Metagenome	134	Y
F076604	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208669_100108112	F076604	N/A	MSEVSTCCGCSFEDSTIADCCTVEMYADTDICPACNEHADASGFICNECGNWFEDPEDKLEYDARMEENYLEEKGDARRKYGE
Ga0208669_10010812	F026406	N/A	MKNSVVFEGGIDKVSTLADGSLRVYLGTPELSNETMVNLFGLIKKPGYVLISANHINQDQIDAVEKATTNAEFSEKTPSQRMRGVMYKLWEKTQPKTMNGDTGQMEYIEFDLFYKRQMNKIIDHFKTKLD
Ga0208669_100108124	F059454	N/A	MKSYLLKKLIAGYKVNPRHSGLDLVALPYRYTNEKILVKHSDKKMIIDKDTPLLGEQTFPDKFGRNKTYTLYYYQWQPSKNQIKLEL
Ga0208669_100108125	F041491	N/A	MSKTETTISFNVSKNINIGNFESVKINYGQSITIDPTKPLAIQREKLIEECYNVVKKETQIWQGLKAVQHVDSQKNTKTVKAKSSYSSFADQQKH
Ga0208669_10010817	F044200	N/A	MSALPFNLNATTTKRAVGEKVEYITPGAHECKITGLTTSEQLEDYKGSPFIQYAVTSNGKVGRCRFWVVKETDKQSTQEWKTKQIKDFLVNAGVKDFSDDSKAMNDAIGNSLMVTFISEEYIGKNRDNEEPVIRTATKYRWSAKSGGKCTYNHDMNQTLTDEQMSEFSMKHSEWSKANNSISASAADDDDMPF