Scaffold Ga0208669_1000994

Overview

Basic Information

• Taxon OID: 3300025099
• Scaffold ID: Ga0208669_1000994
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10661
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (23.53%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.63
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045198	Metagenome / Metatranscriptome	153	Y
F045797	Metagenome / Metatranscriptome	152	Y
F091012	Metagenome	108	Y
F106104	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208669_100099412	F106104	N/A	MTTNEIEKQLKRRAEEQIKQCVADVVDELSGFSHTHTGINRSGLHWYSKRVKPHKKYTSDPEPEDPFNHFDWNELAQLMRRNMEHNLLDTMVERKAKELLNKIDLLG
Ga0208669_100099414	F091012	N/A	MENLWQRLKPAVKKQILAEKDLYPNLVNEVKVRLENNNFWNDLPITTARQVINFTHDSVYDISMNDFMWGDKFIKKA
Ga0208669_100099419	F045198	GAG	MKLEAEHIEQIASYMADSLEDHLDIVFWDGIARVLDEFDIDYEDIGDISDEDCEAIVNETRILFAPKNDSL
Ga0208669_100099429	F045797	N/A	MRILRTVKEDNCVYLEEDFAGTTISTKWRPYTVGDLPNRFGCLEDGTDKGGLYEWFNYKGYTYVRDER