Scaffold Ga0208669_1000921

Overview

Basic Information

• Taxon OID: 3300025099
• Scaffold ID: Ga0208669_1000921
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11171
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (84.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.63
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015849	Metagenome / Metatranscriptome	251	Y
F020814	Metagenome / Metatranscriptome	222	Y
F049926	Metagenome / Metatranscriptome	146	Y
F074769	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208669_100092111	F049926	GGAGG	MRLPEAGTTVGKCTFCKDYIIEGMGNRSKHATVRGGHWMCGDCVIGMKDVVLGAFVDYHKEAESEKEELLAQVRKYGWSVNPETGKLQKL
Ga0208669_100092116	F020814	GGAG	MGRKKGNLGRRVPAHIINPPNKELNPEWWEDEANLMRLHPSYQERKNVEKRQKQKK
Ga0208669_10009214	F015849	AGGAG	VTGIIDNTKDDERKRWCDLLHAGWMYHQQKVKEDESPIIGKEITDGQLFHMSISVAIQDAIALIQQMEAYGYFNDTDEEGEDISKPGPAG
Ga0208669_10009218	F074769	GGAG	MGNLADKRRLREAQGEKIHKGGVTVTDKDEMMYIPFIQSGDPDEERPWLYKGHYGMPDGFINMEMKRMEGHMELTVSNPEKYKEYVEEAVGKFVKKVFEESPHDAKTVSVEKHEGEVDILKKEIIKLQIDNENAKKTVEKFKEVMESLK