Scaffold Ga0208669_1000910

Overview

Basic Information

• Taxon OID: 3300025099
• Scaffold ID: Ga0208669_1000910
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11230
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (79.17%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.63
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005620	Metagenome	395	Y
F014071	Metagenome / Metatranscriptome	266	Y
F060430	Metagenome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208669_100091021	F060430	GGA	MIACIITAIVFSMPTVYYRIKLKAAERTIERHVESRWMWEEWGE
Ga0208669_10009103	F014071	N/A	MTTRPGRLIDKTFTSFTEASGRLEDTIGWVTKAKDFAHEFEPGCKAEVTLHLLEEVLEKAGRELDRASTELAMEVFGDK
Ga0208669_10009106	F005620	GGA	MISDKKLTKHVETFKTFCKNNRLRLREDEDGLPIARAIGKFKTDQFFCNFQDGTIGVYVHRESSRQFTYLNKKLIKLGCTPKQLGDFEASYDLEWMNIPPVAALLKIKKGRAKVKDPQWLRQ