Scaffold Ga0208669_1000840

Overview

Basic Information

• Taxon OID: 3300025099
• Scaffold ID: Ga0208669_1000840
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11912
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (81.25%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.63
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008977	Metagenome / Metatranscriptome	325	Y
F035485	Metagenome / Metatranscriptome	172	Y
F097151	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208669_100084014	F035485	AGGAG	MINSEMIIFLEDLKALLLEIDTHHEEDQNEILIEVIDLIDDKILDLES
Ga0208669_100084015	F008977	GAG	METKENNEQIIKVLSFIMSRLDSLEIEQSRHKEMFYKVRKNLTDANDLINQILDVLEIENPELYDKTIQQLQDGYLKDMVSTIDKHIEELVEWDDEELTQLFSQIVGDA
Ga0208669_100084016	F097151	N/A	MKTKTIDISQFELSADDKRQMKSMDKHSSSTPNYKENKRVNLDYFNEGELDDIAVDDYSECDGREDLKTLGDIGMDVY