Scaffold Ga0208669_1000676

Overview

Basic Information

• Taxon OID: 3300025099
• Scaffold ID: Ga0208669_1000676
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13343
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (27.27%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.63
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001235	Metagenome / Metatranscriptome	741	Y
F001625	Metagenome / Metatranscriptome	661	Y
F021393	Metagenome / Metatranscriptome	219	N
F031648	Metagenome	182	Y
F049929	Metagenome / Metatranscriptome	146	Y
F062151	Metagenome / Metatranscriptome	131	Y
F064801	Metagenome / Metatranscriptome	128	Y
F081741	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208669_100067611	F081741	N/A	MVEPLLVVVLATVTGAILNTIRGFLHSDEGYDIKKFFGAVIVSGFAGIAIAQTIGLSGIDTLGLGLIGLTAGFSVDYAVSKAKKIAE
Ga0208669_100067613	F021393	N/A	MVEEINSETQVDTVEKSANTLVETEKSFQQTVKSGIDTLTEVVQSIAESQLASTEAIQGLATRVKALETPTDLPLSPKGTVAGDDVGAKVTVPDTYQSNSVQAGLDDDRSGDKKPASDKGGLKMQQKADDTELVEKSQYTFTTETPRPNAALETVEKSQVDSSQILQDARAGGYDGLSNVAKGILTGKYYTPSPDEVGVY
Ga0208669_100067615	F001625	N/A	MAVTITTSDWTNANVRKTLSWQAALTSKLRIYKIKVTAGGSDAYATNGVSADLKEGRISTLVAVIPEFTDSLYKVEYDKANEKIKLYSVGGSAGAVLAEVANSTSIANKVFEFLVIGY
Ga0208669_100067616	F031648	N/A	MVEYNHNVKSFNADTTIKGSHGVIVSVYVSKTGSSGSKCIFKNGTTSSGTEEFTIFSEQQGTYVGINRRFEDGIFADITGNAEYTVVFK
Ga0208669_100067619	F062151	AGGAGG	MTSTSYTSADLLESILVDNWTSDNVPNVQKAWERRSVGFIDDRRDQIILTPKAENIKYFGLYGNDHWHDVTIDLDIRTYQNDERHADVVSEIIRIIKSKIRGGTDYTDLRVIASYTRNQYMRNMFNHIITISMRISVSS
Ga0208669_100067621	F049929	N/A	MVIKTFEIKYNGVKETIEYETDIKYGEMEAILSNSIDLSDVSKPKVDIPQYRMNILIKVLRKAPFPVGDTNAVRQLTQSQATEIMKEVMKDYPLAKYLGDWVETFTGSQIDLDTNTQSTTSVR
Ga0208669_10006765	F064801	N/A	MGIKDTFRTVAKNLTNINKSQTDSTTRPSMAQPYMSTDTGAKLPIFPFPLIMIYELADNIDALRIPIETLNREMFKNGFEVVEKFKFKCSNCSKEFQYKPLKNDNPDEQPFEQNQDNESSQVPRSDAKKAIPTELNTTHEMQCDSCGNNKMLRPVPENRKKLEDLLENPINGNDQTLEDLSRQLERDLEIADNAYCLVLKSYDINDATGKINHEKSKIKEFLRIDPPQVAMIADSDGRIGYDDKRNKVFVCPRFEHRDKRLTTDKCDRCGAEALKAVIEVNSVYSVGIPQPKRVVYGEGEVIWKAGKYKPSLIYGFSPIYSIWSKAMALSHMDEYIRKYFDKMRPPRGMLVIASRNYETFRKSWDVLEQKATEDPYMIHPLLVESDKGGKNMAQWIDFTGSLKELEFTVIRKELRQIIGAVFGVLPLYYGELPSGWSQEGLQVTITNRAVKWGQDILYKAFLYKISKLVGVEDWELRLKGGEENDKLRDLQIQGVEIQNMAAMQAMGFEVTRTHTGEFKVSKNPLLSPEAMILGLPEDKEPNTSGSKGRGRGTAAPKEDQQSMDGQPKKQRPSDKGGIGQGHPASGSGTSQSKKMNLEPKPYPDGITSANFEMVKKTLQDSIDFDWTKKKTVEELRSKAFMTVREARDVVKSELSDVKRWEDDESE
Ga0208669_10006767	F001235	GGAG	MATKLNVDKGGQDIGKKLWKKHQDDEYTHVNNYKEAICLNCFTKDAAAATIAMICGECAGKRGREPLLAKISDKYYGLCLFCGEHKFHLEEINARFCHPCHKKIANVTKDYNKKGGAFGTDPFWLRMRKIHGKDWKIIMSGESGRKV