Scaffold Ga0208669_1000245

Overview

Basic Information

• Taxon OID: 3300025099
• Scaffold ID: Ga0208669_1000245
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22425
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (73.08%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.63
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002318	Metagenome / Metatranscriptome	571	Y
F002495	Metagenome / Metatranscriptome	554	Y
F002586	Metagenome	546	N
F003365	Metagenome / Metatranscriptome	491	Y
F005537	Metagenome / Metatranscriptome	397	Y
F008307	Metagenome / Metatranscriptome	335	Y
F008385	Metagenome	334	Y
F059123	Metagenome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208669_100024530	F008307	AGCAG	MVKVLKTSSLELEADFEEIFDGATIEEATQKAHNQKMPSEFAKVNITNNKLIKANVKMVGEENDELKK
Ga0208669_100024532	F005537	AGG	MSDNVKFISEIERLLKQKQNDYGHFDHTSYVMVGIMEKYLSIHNNQDVKIPLKFFGLFMIFLKCWRVMQSENYKKDSFDDISGYSELLRRLVIDENKTKRS
Ga0208669_100024534	F002495	GGAGG	MQNNGSGKQKDWVLFPYDANNEKAIRIDFSGNVNLDNGNKGTILGVKGQSKDGNTKFVKVYAQVGVLFKGDDKFTGEMNYSEAGGHKGLIGWLNDQGTILSGYKNEPRPKQDSQKQKQQEAPF
Ga0208669_100024537	F003365	N/A	MKTIGKEFLKKEEGGMFTADHLSPSQLNKNIDQWFYDYCVLTAAQRKNIKPNMKMIFGGLAGQAMQDIITENLTLEEVMKGKK
Ga0208669_100024539	F002586	GGA	MIKVKLEANEVELALNIASKRYIGNLRMGKTFSYGHSGGFKRTISDGILGALGEVAYAKATNSFYNGSYSDDKQFYSDSDFQNNIEIRTQEKKSYNFLLIRPGEKKGKYILIIKDNNEDFNFSIMGSFIYNNDLPPEKLTHLGHFERPPVYKIELKELKPMEEDVRQDKF
Ga0208669_100024541	F008385	AGGAG	LVKTNIYGDYKICVKCGDPADVIESNKDYCCNCWFKKVNGKSFKEVDKQIKEEERFIKKK
Ga0208669_100024547	F002318	N/A	MVGIIGEKIKMKAKDYKSITNILESQNKGKKFYDFMDMEDVKYRIKEDIVPLPKQYFNNIVKLIKEE
Ga0208669_10002458	F059123	AGGA	MPKSIQDIKKEYPYYKNVPDLELADRIYDKYYKEKEVSKEDFYLNAFPDLADQIVENQDLISPDDEMFLPEGGRELLNFRPTVGMIAERSGVSIDDPATASSRMGGSFGINPEQKAIAIKNSLSKLYGQDIDVRIGANTGQLEYYNPKKKQYSLVDKPGVDIGDFGDMAGDAMVIIPDLAVTVLTAPVLGTGAIPAGAVAAGVGEYARLKIGQVAYDINKKNQDGSEITDGQLFNEAAKTAGVSLAFGYGGLGAAKIIKGVNNIVKGRIQSDDFVDLVNSKTDAEDISKAINSKLEEAKLNTKLRFKTSQALDDPDLMAAQEVFEKSNRLGYVGDFKRANTAEMNALNDYFTLLRSEFDPKGLYKNQNQYDLGNLIKGVITKRNEPQIKSLIKQQETTENLLNQTINELPNGTKVATGVNVRDAITSTREIFKKQSDFALQKLNQASGGIQIKTDIISGALKTLEKQGKDNIFNSAESSLAKSVKNKKILKGEVDVPVTTLRNAMSYLNRQIRKGEKGLTTEDIDVGALKFMVGEINKQVRRDAPDSFVNAFDIFNDVYAKGKAKLDNTIIADIMKIRNKQLVYGDEAIFKTTFKTGNNSKKVADDLYDVIKDYPDAMLAYKNSINDFYKQEVIDNLGKANLIKHRNFLKNYEDKLKVFFTPKEYNKITKIGGLQETVNNIEKTRSDLIKQLSKSFEGKLESSTPGELVNKIYKPNNIGEIRQLKNILSKDPDIFQAFQTNVMKDLNERVTVKNGSLGMDIISPERFKQYVYGSGGEKGYQFAMKEIFGKEFMGNIKTLNDALQITARSAPASLQREGVYGNFFTDIIRARVGQFTPTGRLLTAGKRIYTRSSNAILKNAILNPESLKDLVKLKTLKKSSAEAAYILGKLNGMIFMDYTQ