Scaffold Ga0208434_1035317

Overview

Basic Information

• Taxon OID: 3300025098
• Scaffold ID: Ga0208434_1035317
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1156
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.509
  • Long. (^o): -76.198
  • Depth (m): 48

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051452	Metagenome	144	Y
F056894	Metagenome / Metatranscriptome	137	N
F083236	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208434_10353171	F056894	GAG	MMLGKRNGKMVGTVNLNDRGSNSTVLARLTKWGMESFKFTNETQAMKARDRWRHSVLNDTLNFDLIKPGRSWFVRVSEK
Ga0208434_10353173	F051452	GAGG	MHRHFRMTTEEIIKERMNRAMSSKGKTFFWNPRSKFHVKRKIKNARLTFGGNVELTFFHPLPSKTSKLFTIEPTLDCMDGFCIAN
Ga0208434_10353174	F083236	N/A	MVIHIGDLVRLSGKTRHGKNRIREHGDLAEVAHIDGVLNAVKKFCVIHKHGDSWRWIDLPNDEHMNWKMVHKNDGFHFDKFE