NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208434_1024217

Scaffold Ga0208434_1024217


Overview

Basic Information
Taxon OID3300025098 Open in IMG/M
Scaffold IDGa0208434_1024217 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1484
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.509Long. (o)-76.198Alt. (m)Depth (m)48
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002282Metagenome575Y
F097240Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0208434_10242171F097240GGAMAYKNPNDPEILKRRAEIDFAYMNSERGFIVACIARKFKPSAKKYGGHPAHESMDKKEFWRLYMNHIILMKEKF
Ga0208434_10242174F002282N/ADIIEYNKLTEQLELLKKKGTPVDDRGPNDLTKQIEVLEFRNEKLHNYNQKLIEEVRSLRSKLYIKEN

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