Scaffold Ga0208434_1015503

Overview

Basic Information

• Taxon OID: 3300025098
• Scaffold ID: Ga0208434_1015503
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1989
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.509
  • Long. (^o): -76.198
  • Depth (m): 48

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006772	Metagenome	365	Y
F045677	Metagenome	152	N
F056529	Metagenome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208434_10155032	F045677	N/A	MKEIKTLLPEELVERLSAEAKEKGLHRSELIRERLSQPPNHFGLTTSDFHKAVTKVRRRSSYGLDRQQAESLVATVFNELFSPEHGN
Ga0208434_10155034	F006772	N/A	MPQPKSGRQIIMERLNKAIQLATTADLQRAAMFLEGAREVRKGSRRQRTNARSAQTTAWKKKVDDSITW
Ga0208434_10155035	F056529	GAG	MATKHGNRVYIQVLLEPFRGELFMQEADAQGIKPSALIRQLVYDYLAENTKEEAYCEALVNDKQKWQDAVDARLEGRARNRRSKVDQSDE