Scaffold Ga0208434_1014394

Overview

Basic Information

• Taxon OID: 3300025098
• Scaffold ID: Ga0208434_1014394
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2088
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.509
  • Long. (^o): -76.198
  • Depth (m): 48

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028861	Metagenome	190	Y
F044192	Metagenome	155	N
F087046	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208434_10143944	F028861	GGA	MADRVIYKLTEYNSSTGELKVFYDHVKENLEMQLPTVSEDQEIKEINFNANDMESLCNALNNSDVIEE
Ga0208434_10143945	F087046	AGGGGG	MSNEYEFKVHNFYNYTLEELPKLKEEFEASVSSFESMYEQTINFKEAEADLKKLNKNEWYKKYANNGDYWVEDDYIYTLAEDHYK
Ga0208434_10143947	F044192	N/A	TINKNNKGKTMYIDKYEIVSWGRKWNKGKENKKAEIIKSCYNEDHGMSGKKFLQLLSDLDDAWHQHEGKDCVVHVSFEDPKERE