Scaffold Ga0208434_1003669

Overview

Basic Information

• Taxon OID: 3300025098
• Scaffold ID: Ga0208434_1003669
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5229
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.509
  • Long. (^o): -76.198
  • Depth (m): 48

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005195	Metagenome	409	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208434_10036692	F005195	AGGAGG	MSLKALLRAGKELLKAKKPSRSPGKSEDEISDEFLKRRMELAGEDDAVRLGLLSGKKAQPSPATGTKPSQQTGQELAVRELKNPPVVLKKTKPLQMGDDMAPAFGSSTYDWAMRMGRSKYTADEWLDHLTSTRKVNFKIFGKPAQKTVREQKRFKYDSGPFAGKEVNVSKEELFDSNLAVFNEAGDLTGGLLYAAKKFGLKLDANEVGAMLKLNPINRLQPIELGVNKAAQEAFDVAAKNARNTVRDLQVKYKDRDNLKYELDQIQYYLKADSGVPSRAALKDINESLKMVQKELAIDEKKALNKVIGEINNKVGPMQATKTKYGTETNYTLQGGKDYRETIFTLPEDIPTNASLRNKGGHFTDVIGDTNNIYHIRYDTRFTPDGKKVFMINEIQSDVNQSIAKSLTKAQQLSGEQRLNPFNADIELNLLSSQRGKMLKDLDDAIANNEFGRVNAISSSLKDVNTKLKRISSQRDYSSNQKDYFPMVEADSYGDHAIKYLMQKAARENVDYVAVAPFDKVSFRQGYKAGNERFYGYANGKGIGKKGKAVIPDVMSKNARFYGSKAGPTKISLSDPTKPYKSVSSDTFKYPKDHPLKGKEIKSTYHSSSGMNPEKGTKNIPDGDPRLYFDAYAIKVVPLMRNTQKTYKSKGGLVVDMFKPIRYN