Scaffold Ga0208010_1079323

Overview

Basic Information

• Taxon OID: 3300025097
• Scaffold ID: Ga0208010_1079323
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 2_ETSP_OMZ_AT15125 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 694
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -13.003
  • Long. (^o): -80.809
  • Depth (m): 160

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027156	Metagenome	195	Y
F029400	Metagenome	188	Y
F048570	Metagenome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208010_10793231	F029400	AGGA	MKVGDLVTFCPESWGTPLEDRPLGVVVNMESLKNVHPMVTAIFPGDDIPYSSMIEDFEVVNENW
Ga0208010_10793232	F048570	GGTGG	MKIGDLVRCRPRNERENYDAWLGLIIGEAERPAVTVAVRWVCSDGRGDVETVNHTPEELWVVNESR
Ga0208010_10793233	F027156	N/A	PNGDCRMIPKVGQLLRWYDNPLYCADDTELENDVGIVKEVQLEGVNFFDNDEYAYVVLIDWCKGPHTSYHDEQEYEESIRSGEIVVV