NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0208010_1079323

Scaffold Ga0208010_1079323


Overview

Basic Information
Taxon OID3300025097 Open in IMG/M
Scaffold IDGa0208010_1079323 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 2_ETSP_OMZ_AT15125 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)694
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-13.003Long. (o)-80.809Alt. (m)Depth (m)160
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027156Metagenome195Y
F029400Metagenome188Y
F048570Metagenome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0208010_10793231F029400AGGAMKVGDLVTFCPESWGTPLEDRPLGVVVNMESLKNVHPMVTAIFPGDDIPYSSMIEDFEVVNENW
Ga0208010_10793232F048570GGTGGMKIGDLVRCRPRNERENYDAWLGLIIGEAERPAVTVAVRWVCSDGRGDVETVNHTPEELWVVNESR
Ga0208010_10793233F027156N/APNGDCRMIPKVGQLLRWYDNPLYCADDTELENDVGIVKEVQLEGVNFFDNDEYAYVVLIDWCKGPHTSYHDEQEYEESIRSGEIVVV

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.