NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208010_1024841

Scaffold Ga0208010_1024841


Overview

Basic Information
Taxon OID3300025097 Open in IMG/M
Scaffold IDGa0208010_1024841 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 2_ETSP_OMZ_AT15125 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1432
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-13.003Long. (o)-80.809Alt. (m)Depth (m)160
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028316Metagenome / Metatranscriptome192Y
F035326Metagenome / Metatranscriptome172Y

Sequences

Protein IDFamilyRBSSequence
Ga0208010_10248412F035326N/AMKNKVTTCGYFIKRLRDNGYKVNRIFSDYTSQDPRRWTIMIDPDESALYITCYVNYDWTDDFKFELHDGTQFKTLQLRTDSMEVIMTKLIEKDILPSEEKHT
Ga0208010_10248413F028316N/AVKKNTPKSKNKNFDNLLKSSINAAESIDSSDQDMSVINDYLAEHLKSFVLLGYDLKSESVVIISGKTPQDYDAIETLLRRVGNVDFFKDVQEQTNTNE

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