Scaffold Ga0208010_1015997

Overview

Basic Information

• Taxon OID: 3300025097
• Scaffold ID: Ga0208010_1015997
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 2_ETSP_OMZ_AT15125 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1877
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → environmental samples → uncultured virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -13.003
  • Long. (^o): -80.809
  • Depth (m): 160

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001039	Metagenome / Metatranscriptome	795	Y
F015325	Metagenome / Metatranscriptome	255	Y
F093698	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208010_10159971	F093698	N/A	QISKNGVLMFYYWDIDAEPDEKGNQWRCAKNPMTIKATTTIEQ
Ga0208010_10159972	F015325	AGG	MTKKIWLVIEKNTYGENNHSYNISKTADTIEQATTYKVHLDALNESKNKAYFLASDISTIIDKVVYTHNIAVDKQPLILKDEVKDTSSEMPF
Ga0208010_10159973	F001039	N/A	MIDYNLVLYFGIGLIVFGFVLFLVAIHFERKAEIELFKQEQAYRKAKENERL