Scaffold Ga0208010_1015549

Overview

Basic Information

• Taxon OID: 3300025097
• Scaffold ID: Ga0208010_1015549
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 2_ETSP_OMZ_AT15125 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1912
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -13.003
  • Long. (^o): -80.809
  • Depth (m): 160

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002078	Metagenome / Metatranscriptome	596	Y
F029567	Metagenome / Metatranscriptome	188	Y
F035963	Metagenome	171	Y
F059346	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208010_10155491	F059346	GAG	MEKILESAWALFVAIGWFFINRITAKVDSLEKDKADGSTVGRQAGLIHEVDRRIDELQHTTVPRQEYKSDIASLHIRANELERSKDKVTDVRIVNKDDPSPAKKGK
Ga0208010_10155492	F035963	AGGA	VDKINEMYIAITSGLLGIGLWIFKRLFKSIDLAHERIDRLESKVVDRAYLESQLVPIRQDLKIILKHLLGTKK
Ga0208010_10155494	F002078	AGGAG	MEAFMNQGWFQIAGEVVLMFTALTGAMPDRFVNKIPVLGKLWPIFNWLAGNIFNNVNHPKGMAALQEVEDELDKAKAKVKVRSGLPDVLDGM
Ga0208010_10155495	F029567	N/A	MSLTGCSILSEMVAPATNFGIGLYNADSYYSKECLWYEPVEFSAETKEWITKNSPPGVVVKDIAKVARNNDLYSEVCKK