NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208010_1014466

Scaffold Ga0208010_1014466


Overview

Basic Information
Taxon OID3300025097 Open in IMG/M
Scaffold IDGa0208010_1014466 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 2_ETSP_OMZ_AT15125 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1993
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-13.003Long. (o)-80.809Alt. (m)Depth (m)160
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002601Metagenome / Metatranscriptome544Y
F072243Metagenome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0208010_10144662F002601AGGAGMIKLIVFSVLLNTGEIQAVIPDDTKIERRRRNDKGKRDRRRGGSGLR
Ga0208010_10144664F072243AGGAGMGLLDFLTKPVNPHRQNFDEYDIFLAERGVEKQSWDYDYTAAYEDYRETGVDPYDPKSKHWVSKFKHPLSPERYIQDKESNKWFDTIKNKFVNEEKVAQQTIERLEYLESMPLNGNKKR

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