Scaffold Ga0208010_1012952

Overview

Basic Information

• Taxon OID: 3300025097
• Scaffold ID: Ga0208010_1012952
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 2_ETSP_OMZ_AT15125 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2130
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -13.003
  • Long. (^o): -80.809
  • Depth (m): 160

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029400	Metagenome	188	Y
F029601	Metagenome	188	Y
F105509	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208010_10129523	F029400	GGTGG	MKIGDLVTFCPEAWGTPLKDRPLGVVMNVEKRWHPDGEMMVTVLFPTDDIPYSSNIKDFEVINENW
Ga0208010_10129525	F105509	AGGAG	MNIGDLVLNPCGETAILLSEPRLEDDPDFGDPYYVADVLLTEFGEKDVWTTEDLEIINES
Ga0208010_10129527	F029601	N/A	MMKVGDLVRFNAPDDIFHGSKGIIVQRVESNIYVQGFHYEIQTFCGYVIVALDFEIERLENEVEIPR