Scaffold Ga0208010_1003653

Overview

Basic Information

• Taxon OID: 3300025097
• Scaffold ID: Ga0208010_1003653
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 2_ETSP_OMZ_AT15125 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4604
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -13.003
  • Long. (^o): -80.809
  • Depth (m): 160

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010920	Metagenome / Metatranscriptome	297	Y
F016410	Metagenome / Metatranscriptome	247	Y
F016673	Metagenome	245	Y
F067830	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208010_100365310	F016410	N/A	MRRFSNRKEQLEWADKLLRKLSDKNTGGVTPIIKSMIIEKYIRRLKNE
Ga0208010_10036535	F016673	N/A	MESEANLEDIAIKSYLELYLRSLNDSKPQKFINIIKGRMLELIKRKQLRNK
Ga0208010_10036536	F067830	GGAGG	MSDRKSKLVIVDEIGNDKALAYRNKPSVEIYPTTKEVGFSEFSYSWEEIIAVGKKLEELHRKSLADVL
Ga0208010_10036537	F010920	AGGAG	MSEIKLYDVLISYPIQVGAENEEHVREIIMANELLRNAADLTLQITEVKPDE