Scaffold Ga0208011_1025574

Overview

Basic Information

• Taxon OID: 3300025096
• Scaffold ID: Ga0208011_1025574
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1479
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -11.499
  • Long. (^o): -81.405
  • Depth (m): 120

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013357	Metagenome	272	Y
F042854	Metagenome	157	Y
F062279	Metagenome	131	Y
F064629	Metagenome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208011_10255741	F042854	N/A	ITLRKFERELEKYTRNRMRELRGEAPSPWEDDPFIDAYTSRRIREMRLEHEMEQREIDLDNVALGGYTVATMEAYSGKS
Ga0208011_10255742	F013357	GGAGG	VARARYIPGALVEARSSKYGKGFGIIVRGPTMDTKASGRYRDLENPQPWFVVHWFEKPGSVDSYYMRLGKGQVEMTKNQIKLVRKK
Ga0208011_10255743	F064629	GAGG	VTRLYQECAGHLDDNPGRKGLRNFTWTNDAIRGWEQIWHQLWRFGYKWEWQNGDRYARGYGETYNLFAVHNDAVRLDMAIPLPGIEVVEEARELILADINDAHELDQLVGTIDRWLKKHYAP
Ga0208011_10255744	F062279	AGGAG	MYERMKVFLRRCVDLVVAFILIGAMFAYLMINSVIATQVINDLRLDTYVSYETGVGVVLLVLLLGWGPVWLMRSLDDNR