Scaffold Ga0208011_1017195

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208011_1017195

Scaffold Ga0208011_1017195

Overview

Basic Information
Taxon OID	3300025096 Open in IMG/M
Scaffold ID	Ga0208011_1017195 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1901
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-11.499	Long. (^o)	-81.405	Alt. (m)		Depth (m)	120
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F020018	Metagenome	226	Y
F062817	Metagenome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208011_10171952	F020018	N/A	MIQITKWLNPKDETWYRGTYITVLEWLMIEKEKIARITGKNTIIKTNPEGAKAVFRKRIK
Ga0208011_10171953	F062817	AGGA	MFQDRMADDADWKDGMNVFRSRVVEQLDGILQVLDLLEEDVAKLKQKENTP

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