Scaffold Ga0208011_1005857

Overview

Basic Information

• Taxon OID: 3300025096
• Scaffold ID: Ga0208011_1005857
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3661
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -11.499
  • Long. (^o): -81.405
  • Depth (m): 120

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003531	Metagenome	481	Y
F008252	Metagenome	336	Y
F015219	Metagenome	256	Y
F062179	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208011_10058571	F003531	N/A	IERNKMKRKTWTENETELARQLLKKHSYSTVGKILHRSKKSVIGQFYREKVLKGYTPPPDSKYTHKKEKNIFVDF
Ga0208011_10058574	F015219	N/A	MKNLPFAQWTRIENRHGGGIPDLYGIYGGQAIWLELKCIKQNSINISPLQISWNYNNFRHGGKNYYIVQDTRSKVVKLYDGDKGRELAEQGFKYDKTVAVMERLKTIGDWREFQDHIFNI
Ga0208011_10058577	F062179	AGGAG	MSDLRIQTAIDNGDLPKDNGRSFKDITLEQATNPTVIKAYYEQFKKEFGRPSVFASPTKVPRSEKT
Ga0208011_10058578	F008252	AGG	MSKYNGLWFFYDDDISIYWNRSHTFNVWNNGKEVNCFTVMESMTPTQAEEQADAWLEYELEEEKLRHADDMEFQFESPDLFSM