Scaffold Ga0208011_1005393

Overview

Basic Information

• Taxon OID: 3300025096
• Scaffold ID: Ga0208011_1005393
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3840
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -11.499
  • Long. (^o): -81.405
  • Depth (m): 120

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015345	Metagenome / Metatranscriptome	255	Y
F023365	Metagenome	210	Y
F086311	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208011_100539310	F086311	N/A	MANGTLITITSNDIGTVIRGTAKSRSNGTDTILDLNDVSTITIYLRDPDGLVSSHTATATNADGGTDGIWSFATTTAIFADNAGVWKIQAKYSLAAGTIFYSNIKTLNVGEVLE
Ga0208011_10053933	F023365	N/A	MANLGEITEIVNASELTLEVGSDNYILLTNLNLHIGRPEDRVATTDGGSLYSYGKGDHWFTATLLVSTPELSSLNTLGNTDSNGALTSTSWKIVAKNVSGATKTFAATGVLREYDVSKPTEGKVSIDIFVRITGDTISIS
Ga0208011_10053939	F015345	N/A	MTSIDFFGIKERIVEILKDDTTNLWDSTPSDKTKFRKIEAGSPTTKGINQPPLPRVWVTSDDLVANVSNVAVVSGNIPKGKEYDFRIKIIFVVESKDGPKTEENIDDFTKSIINQLETNYDLRTPGGAESTRLAESSEITQIMDLPQQFKGDTVKGRVIKFKVIIRA