Basic Information | |
---|---|
Taxon OID | 3300025096 Open in IMG/M |
Scaffold ID | Ga0208011_1005163 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 3948 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (75.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Flammeovirgaceae → unclassified Flammeovirgaceae → Flammeovirgaceae bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | -11.499 | Long. (o) | -81.405 | Alt. (m) | Depth (m) | 120 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F045084 | Metagenome | 153 | N |
F069360 | Metagenome | 124 | N |
F090364 | Metagenome | 108 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0208011_10051633 | F045084 | AGAAG | MKLLMEQWRNFLTEDKMADINADQAYSTKVKGINVIINLKDTDLEGTRHSKERQFRHDEKISNQAIIQAVEMAIGKIIQDFANGELANDEPFHIRMVGRGKVPALNVIAVLDMRKGPDTIKVITVMRKDDFKTDSFGGGEQKTYTVHSR |
Ga0208011_10051634 | F090364 | N/A | MKKLMTEWRNFLQEGRYEAATTELTRKVIPHVKYIIDEVIPSENVQNSRKDLILVIGKKYLRGKGLPKELDDKMYLAQFAFHIDKKLAEETGDKFQIGGLFMGDTEDPEDSYIKINSFLDIGFNEQDLNAYLGELKAVTIHEIQHGGQTTDVLDTAYPPKGPLSPINWDKNKIDGIRGYYASESETDTYTKEIYKRAKYHKIPFPEALDMRIQQFFDMYKRRRDNMNAEDEKETPGEYRVKYTEEELNDFFYKELRDKYIAFAKTKYPEAVGI |
Ga0208011_10051638 | F069360 | GGCGG | MKEADDFDWDAFGFSDEERGESEGRSSHYDDLVGLGRGDTFTIGNRKPIYRVVGALTDRGEAKGSQTKLVVIDGSAERKTYEIRTTGEDYEVGAFGKDENNEHTILVGKTGFVMNITKPAGTN |
⦗Top⦘ |