Scaffold Ga0208011_1003082

Overview

Basic Information

• Taxon OID: 3300025096
• Scaffold ID: Ga0208011_1003082
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5363
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (43.75%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -11.499
  • Long. (^o): -81.405
  • Depth (m): 120

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031649	Metagenome	182	Y
F040145	Metagenome	162	Y
F053334	Metagenome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208011_100308210	F040145	GAGG	MTKKKWLQEKVFVDEYGRPYNLSDVPMTYMTRSESFKKQSFDKKKINELYNKDKNTIIIDGC
Ga0208011_100308211	F053334	N/A	MTKKKKKVPFHIQNDYKQYSYEDGGLTITFWAKDEADANLYIKKVKGK
Ga0208011_10030825	F031649	GAGG	MLANKTKKTLMGLVFIAMLYMITVIMFILDGAPFHN