Scaffold Ga0208011_1002442

Overview

Basic Information

• Taxon OID: 3300025096
• Scaffold ID: Ga0208011_1002442
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6178
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Balneolaeota → Balneolia → Balneolales → Balneolaceae → Balneola → unclassified Balneola → Balneola sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -11.499
  • Long. (^o): -81.405
  • Depth (m): 120

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018292	Metagenome	236	Y
F039088	Metagenome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208011_100244210	F018292	AGGAG	MTDTKDNKKDAWGTLITQKTPLNEIKKHFKGKGGGPEGESHIIDANADKKEGFVWVYSNKSDASKIIERCGDAILDYSFLDKNGVQLKIDRKAFRGIQCAFRNVK
Ga0208011_10024427	F039088	N/A	MMNGEQENLFDAHLLKTFKVGDLVSWTHLVGDKEYGFIQEIYSESKGINRKFIFAKVIKTDGSYEPFNLSYLTKESKQNVGH