Scaffold Ga0208011_1002110

Overview

Basic Information

• Taxon OID: 3300025096
• Scaffold ID: Ga0208011_1002110
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6723
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -11.499
  • Long. (^o): -81.405
  • Depth (m): 120

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019113	Metagenome	231	Y
F034892	Metagenome	173	Y
F042854	Metagenome	157	Y
F100958	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208011_100211010	F042854	N/A	MEITLRKFDRELEKYTRNRMRELRGEAPSPWEDDPFIEAYTSRRIQEMRLEHEMEQREIDLDNVALGGYTVATMEAYSGKT
Ga0208011_10021106	F100958	AGGAG	MVFHGDYEVDFEIYEKREGDWRSQLLGHMPGINPEDAKARWMEAHEISSDRIDRIQAVPALEEWK
Ga0208011_10021107	F034892	GGA	MEIKVGDLVRIKGNDWLGKPLGIVTEIKHLIHDQSGTEYTAVSAVVGGNFFTFPDDAFELVNSVESEKN
Ga0208011_10021109	F019113	N/A	VTQTFEVGDLVRDRLNKGQGNYGLGVVVSTDPGPTLGERWDRTDGVHPEPGKKYAVYFNKFEKTITFHGDYLEKV