Scaffold Ga0208011_1001951

Overview

Basic Information

• Taxon OID: 3300025096
• Scaffold ID: Ga0208011_1001951
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7075
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (82.76%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -11.499
  • Long. (^o): -81.405
  • Depth (m): 120

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012401	Metagenome / Metatranscriptome	281	Y
F014127	Metagenome	265	Y
F024648	Metagenome	205	Y
F029745	Metagenome	187	Y
F048570	Metagenome	148	Y
F062171	Metagenome	131	Y
F073529	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208011_100195115	F073529	AGGTGG	MKIGDVVMLRKGRYNFSATEKAKWTWTDVLGVITDDRGFVDGTAEYKVYTVDNKHSWEHIEDLRIPE
Ga0208011_100195117	F029745	GAGG	VASKAPRVGDVVKSRVTTESVAGFIVSTEGIHVWVRFFDTALEGESWDVYTRRDTLEVLSRANSR
Ga0208011_10019512	F062171	GAGG	VKIGDLVSYGTLPHWKLEGCLGILVRKLQWNDTWIEGINWDGDPAWWIQYVGDEAPTWNYEEELTLVTEGN
Ga0208011_100195121	F048570	GGAGG	VKIGDLVRCRPRDPGENYDAWLGLIIGESYSGQHTVQWVCSDGRGDVEEVNHTPQELEVISENR
Ga0208011_100195125	F012401	GAG	VCYSILTMNEQPSEDERMIDGILSLEKAALEKLTEDRIASGSLGEEVEDLLSEAGIYWDTLNKEYFSIDVFQAETFKRLAAEYASQDYA
Ga0208011_100195127	F014127	N/A	MEEGTTMQQRINNTLGRMMITGDEKSWDYGFLESLQEQLTKRGSLSPRQEEILQQVEGRWSDEALKHRASWVDDWDKEKEEKFWIALQYYHKTGYYGNIVYKYLTTAGCRCAGAPSEKEYNKLVLNKYAAGVIRNVQAEPKFPVGGTAVFRTGARTNRGKPCVILKHGNTEHVTSHAKGAKPIQVLPIGSAAPIWTEERWLKKAKKRK
Ga0208011_10019513	F024648	AGAAGG	MCEYHLYPGDMFRTKAGLGLIVKKSGGYFTYSTVGDDQQKAYQTIETKRFYGYCDDMSHGQILEVILLPNRKYRRKRK