Scaffold Ga0208011_1001082

Overview

Basic Information

• Taxon OID: 3300025096
• Scaffold ID: Ga0208011_1001082
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9917
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (70.37%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -11.499
  • Long. (^o): -81.405
  • Depth (m): 120

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008913	Metagenome / Metatranscriptome	326	Y
F015796	Metagenome / Metatranscriptome	252	N
F047318	Metagenome	150	Y
F059066	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208011_10010821	F008913	N/A	MLIFYPKLDNGNILWTCDNCGRTAEVSCADTNAVALVCHCDGKVHPECNNDWYYQSLYWNRIPMNKRIEYRKGRSKQHER
Ga0208011_100108215	F015796	GGA	MNSRQMKRYDDTRDRVIIREWFKLNGVLLEHGSKYGVDLEGKDYDVEISHLSFDSLWNQWKKENRFRIEIRKRNHYWNGIYNKSKTTHFVQMNKSGKELLVYPQDLIMEYSNNEVELGYLRSKGFNLKERTFMYIPFDKGKDVIKRYEI
Ga0208011_100108224	F059066	AGGAGG	MKDQLKDNLSEENLNHYYHKWLYQYGGASDVVTLREYIEDYDSDVYGNIDKYDTGLCPCIMCMEESL
Ga0208011_100108226	F047318	N/A	MKKNTKNTKITYSEEALRYFQEMNDNDEFMTEPVSGDYVDYLLGDVGNNSYEGTTMDTEWDDLSDDSDWFMD