Scaffold Ga0208011_1001062

Overview

Basic Information

• Taxon OID: 3300025096
• Scaffold ID: Ga0208011_1001062
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10080
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (93.94%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -11.499
  • Long. (^o): -81.405
  • Depth (m): 120

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012400	Metagenome	281	Y
F024571	Metagenome	205	Y
F055207	Metagenome	139	Y
F080510	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208011_100106219	F012400	AGGAG	MKYTIKKFMGDDQYSWAVFRAQDVKGMRSPICDPYIQPVINGLSRADAQYHKKNLEAM
Ga0208011_10010622	F024571	AGGAGG	MDADLNVDVIDNETGEIYREGVMLINAHIFIAKEAGKIVQDEVEIIDLDDIDGGGQMEVRSIYVDFPEEKLKRELSADAIIRARQFWQYENGGGQVRNRS
Ga0208011_100106222	F055207	GGAG	MNRGFESIADIVNDIADRALGGFDDFEDDEYHYPRMILNWYKSEDCPEPLNEEVYQQVMRENDERVYRAIWLKIHSRLY
Ga0208011_100106225	F080510	AGAAGG	MSWIEEDGLRRNKQGILLRKNQDRAPNLNVGDRFFDCANGRWATLLRIRPVNEALGAPFEALYDGCDRFTAFIGVAMHCDIGEIRHESR