NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208011_1000794

Scaffold Ga0208011_1000794


Overview

Basic Information
Taxon OID3300025096 Open in IMG/M
Scaffold IDGa0208011_1000794 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11714
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (70.37%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-11.499Long. (o)-81.405Alt. (m)Depth (m)120
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013357Metagenome272Y
F017121Metagenome242Y
F019113Metagenome231Y
F021532Metagenome218Y
F064629Metagenome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0208011_100079414F019113N/AMETLEVGDLVRDKLNSGEGTYGLGVVVATDSAGWPEDQVPVLGNEQVYADQDIPGKRYDVYFNKFERTITFHGDYLEKV
Ga0208011_100079416F013357GGAGMARRKYVTGALVEARNSKYGKGFGIIVSGPNLKKLSAHGYQTFGDPQEWFKVHWFEKPGSVDAYYIRRGNGIVDMTKNQIKVVRT
Ga0208011_100079417F064629GAGGMTRLYEIGTDDPYPDRKSLRSFTWTHEAISDWEDVWHDLWHLGYKWEWQDYDRYARRYGDHYNLFGCHGDAVRLDMAIPLPGVAVIQDILDSLLRDPRDDAKLDHAVSAIDRWLKKHYAP
Ga0208011_10007944F021532GGAMKNRKVIVLKDKWNTEATEPPAARALEMVQVMEDEFIETPFPLSLNAQKRLLELIYNRKSGIITRQELVDVLFNPADTEKGTIIRCRL
Ga0208011_10007945F017121AGGAGMFSLIRQILKKAQSFDAVYERLAKIESQLERLEKLADENESLWQFLDEQKEAEGIWSGNVDEFQDEFSDIIVRNMKPYGDA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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