Scaffold Ga0208011_1000710

Overview

Basic Information

• Taxon OID: 3300025096
• Scaffold ID: Ga0208011_1000710
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12320
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (43.75%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -11.499
  • Long. (^o): -81.405
  • Depth (m): 120

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026718	Metagenome / Metatranscriptome	197	N
F042023	Metagenome / Metatranscriptome	159	Y
F043614	Metagenome / Metatranscriptome	156	Y
F080506	Metagenome / Metatranscriptome	115	N
F087296	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208011_100071010	F087296	N/A	MITLTKASRVAQEVNEEEANVEYSEWVLKWQLIESDMMFNVPWKKLYERVGLTKTMSGPSTCRWSIAEKKFWAEYLRFVTEVYHYGGTLDELKRRITDQRIYNSRTDKTRRF
Ga0208011_100071015	F043614	N/A	MKSITLTFERKGSTVFSDGEDYYAHYVHEPTMSKWQILWQYSQSGEHIGSLRKLVKTDEPIHWEYKWEYQGEVFRFKKLEQGLKVDIDLLEADETYESVSRALATPPPSLEPEPQEERVSFEPEMPNLTENPLGWA
Ga0208011_100071020	F042023	GAG	MNNMSLEKRVYICFLIVIIFFCSGCSTTRWEWMPNRDGLDPDVNKVALPDRHELGGIEVDVLKISF
Ga0208011_100071028	F026718	N/A	VTNLKKLEKLTQQLELHENDFIDYVTRANYSIILVSEAGRIKWCNEFFQESFRVNSEDVHNKGLNTIIGVDVLHKKKRTATAQINGATHTIKTTDLIRSGKLIHKKVTLIPHEQD
Ga0208011_10007109	F080506	AGAAG	MKLEEAVRIGKGVDLTTIEECVNNIHSFSPQIFPYNKINEELTELYEEYDNYKKHPETWMEALCGMKA