Scaffold Ga0208011_1000653

Overview

Basic Information

• Taxon OID: 3300025096
• Scaffold ID: Ga0208011_1000653
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12840
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (72.97%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED197 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -11.499
  • Long. (^o): -81.405
  • Depth (m): 120

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018196	Metagenome / Metatranscriptome	236	N
F023368	Metagenome / Metatranscriptome	210	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208011_100065328	F023368	AGGAG	MHKYNKSTTKYKDVPIEDKIFSYLDKQDTNNAETLCMLLAHLSMPTMCCSWVSEEHFNNLLEKYKIDITPYVKDDERITTSIKSEIADEMFKLVETGKYKKRNLIKVLREKFKDVNAGVIHRLIKKNLSLRILEIDRTYKTKPYVIKGKYYIGG
Ga0208011_100065336	F018196	AGGAGG	MRADDITKAVEYKQGHFNMVQYILKEKPEWSISVYDKETGETPVEYSKDYEEIRKAIKDYETEIMVYEKNNKQIGWAWFIPYNETDEDIVTDYSDTLTLNKWAKQFEELHKQLEGA