Scaffold Ga0208011_1000574

Overview

Basic Information

• Taxon OID: 3300025096
• Scaffold ID: Ga0208011_1000574
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13824
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (82.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -11.499
  • Long. (^o): -81.405
  • Depth (m): 120

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009778	Metagenome	313	Y
F017905	Metagenome	238	Y
F037429	Metagenome	168	Y
F066696	Metagenome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208011_100057422	F009778	GGA	MIKLKDLLFEKVAHSKKSLEWVSLDFIPMTPKTMKQIMGDTPITVFHNLNPDSIKNKLPKVIGKKKSISTYSTDTEGHLAVGGGVQTGGGVVLEVEGKVLVAGTEDLGSVPDESGRRWIHPSTFGKIVGLKQFEGGGGGIYFRKHLYNMDRKLEDILWRYKTSLLKSPTDSAEDNARFPDYTGKQKADLIKRYIDASNKFLLKMKKTIKKSFENNINNPRTTKFMSKYGYNELLVYDVKVKDAYIVLDIVGDPNDFDATEKAIKNITKDLKPYVKGKIFTGFAGGVKKFIKQRGGKV
Ga0208011_100057427	F017905	GGAG	MTKQEILDRIQNVLYQGVDTESQDLDLLRHDLENDIIEEGEK
Ga0208011_100057428	F066696	AGGAG	MDEREIIYEKVGNYTKYKLVEMLIEKHKDKFKNLNQVEELADEILEVLAISGLKHYNDLREGFNEDR
Ga0208011_10005743	F037429	GGA	MSKQEIIEQLKNIKDQYLNDSKGEIDADAIIEAITDVIHDVEGNDGLDFSEDYDDEYYDNFESVDFTQLDV