Scaffold Ga0208011_1000419

Overview

Basic Information

• Taxon OID: 3300025096
• Scaffold ID: Ga0208011_1000419
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16730
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 45 (97.83%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -11.499
  • Long. (^o): -81.405
  • Depth (m): 120

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010027	Metagenome	309	Y
F024571	Metagenome	205	Y
F080510	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208011_100041927	F024571	AGGAGG	MDLNVDVIDNETGEIYREGVLLANAHIFIAKEMGKIVREDIHIEELDDIDGGGQMEVHDIYVDFPEETLKRDLSADAIIRAREFWQYENGGGQVR
Ga0208011_100041940	F010027	AGGAGG	MATTANSKYGFELTSSEVLAAHPKSGLSTVVISGICTNPDGVSFNFVATNNLDQRYPDRFKVNWAGNQPRMPKVVGYGLTEDVTAAGHQVAEKLYFTRGARIAIAGRCKALWPRGKQRRYAAVAAEKAA
Ga0208011_10004197	F080510	AGGTGG	MSWFKEDGLRYDEKGRILRLDQRVAPKLNVGDRFYDVAAERWATLVRVRPPEEALGAPFEALYDGCDRRGPFIAFAMHCDIGEVAA