Scaffold Ga0208011_1000232

Overview

Basic Information

• Taxon OID: 3300025096
• Scaffold ID: Ga0208011_1000232
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23719
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (85.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -11.499
  • Long. (^o): -81.405
  • Depth (m): 120

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006959	Metagenome / Metatranscriptome	361	Y
F010475	Metagenome	303	Y
F016883	Metagenome	244	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208011_100023218	F010475	AGGAG	MISFIIPFSTIEKDKFLNLNEKEQLWEENDSANIIYSTIKTIKNINSLKCEKEIILVDNSHTWPKMDLPNVRVIKGWQALPVEELEKIPEYMNHRDIQASLDNLGCLTMWVSMAFHLGTQEAKGDYIVLQHNDTFYHQDCIDEMIEHMDKEELEYISVDNKKIWISTYLLNRDFLDKYIKEYSQQPVSIRPENGGYVKTKKLGFADAYFFLCKRKFFDNYNIDWYYGDTNHGATIYCLYNDLKYLHLGPYYDNPNWETNDTLHTYYYKDKPFLTHLKGGFSENKMSSEDFEEEFNKYLQELKNAK
Ga0208011_100023220	F006959	AGGAG	MYYEATVIFIEEIQTKNGVKEKKVRKTYLVECDSVSVAEAKVNEWLKDSPFVFETIIA
Ga0208011_10002328	F016883	AGG	MTFSKAWLEKKIMCGLCNFGCCNHPSFHVEITEEEQEFYQKEYGLDLELEWNQEGCCQLLKEDNTGCSLEDDRPVFCKLYPLVENKSNRLVMNNWGYLHCPKPDNYELDKVVDGKYHYKLKKKHKNKRDKLILDDKIENVVKQIWLQAKDSIIQKYGQEYYEKIKTEMKQTIKHEFF