Scaffold Ga0208011_1000129

Overview

Basic Information

• Taxon OID: 3300025096
• Scaffold ID: Ga0208011_1000129
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33369
• Total Scaffold Genes: 73
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 63 (86.30%)
• Novel Protein Genes: 14
• Novel Protein Genes with Ribosome Binding Sites (RBS): 13 (92.86%)
• Associated Families: 14

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -11.499
  • Long. (^o): -81.405
  • Depth (m): 120

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005524	Metagenome	398	Y
F012401	Metagenome / Metatranscriptome	281	Y
F012463	Metagenome	280	Y
F014127	Metagenome	265	Y
F014465	Metagenome	263	Y
F019113	Metagenome	231	Y
F021532	Metagenome	218	Y
F024106	Metagenome	207	Y
F024648	Metagenome	205	Y
F027156	Metagenome	195	Y
F029745	Metagenome	187	Y
F030754	Metagenome	184	Y
F040056	Metagenome / Metatranscriptome	162	Y
F077179	Metagenome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208011_100012911	F021532	GGAG	MNEKEVIVLKDKWNPGAQEVPTARALEMVEVNDSEFRETPFPLSLDTQRKLLELIYTRKSGIITRQELINVLYNTETVEPGKIIRCLI
Ga0208011_100012922	F019113	N/A	MEVWKDTNFKVGDLVRDTLNKDDHSYGLGVVVAVDSHSLLGEAPEEDYPKFADQDIPGKRYDVYFNKFERTITFHGDYLEKV
Ga0208011_100012938	F024648	AGGA	MSNYHLYPGDMFRTKAGLGLIVKKSGGYFTYSTVGDDQKKAYQTIETKRFYGYCDDMSHGQILEVILLPNRKYRRKRK
Ga0208011_100012939	F005524	GAG	MDIGDKVQHFGTGSVGTIIDSSYEVETPFQQLCVQWEDDLAPHKNSWERRADLDVVLAAAYDFHIND
Ga0208011_100012941	F014465	AGG	MKLRGMTMIGALVRDCSQIMKIVTGYKCDQRGEWIQFAGDHVNAWYQLENFEILSLEP
Ga0208011_100012942	F024106	GGAG	MDFQVGDLITLKHYGTGKTPAPLAMVVSLDALVLGRIQIQFCDSSRAEMAAPEHWKVVSRNENR
Ga0208011_100012949	F077179	GGAGG	VKQDDYKPGDLILFFQGNSRFEEGPEEIGWIVRRDHDDPSEPAVMVAFPEPNKNGLLHYFDVELREWEKAGTIEVKRG
Ga0208011_100012950	F029745	GAGG	VASKAPQVGDVVKSRVTTESVAGFIVGKEGIHVWVRFFDTALEGESWDVYTRRDTLEVLSRANAS
Ga0208011_100012951	F040056	GGAGG	VQTQADFRIGTLLRWNGDDTEGADIDELGIVIQMPGETAYYYIAWGTTNTVSHHTPDMVEESLYQQQMEIVG
Ga0208011_100012952	F027156	GGAG	MIPKVGQLLRWYDHSHARAFVERPQENNDIGIVKEVHLEGVHFFDDDAYEYVVVIDWCKGPHHSEHDQEEYEESITRGEIVVVE
Ga0208011_100012960	F012463	GGAGG	VKIGDIVKLVAEPQVDWMFNYLEETFQVLDFPTETGVELKMIGSVPDWIWIIGKDNLKVADEEG
Ga0208011_100012963	F012401	GGAGG	MNEEMLRALINGDVLQLEKTALESLTEDRRASGSLGDDVDDLLSEAGIYWDTLNKEYFSIDTFQRETFDRLAAEYASQDYA
Ga0208011_100012965	F014127	GGAGG	MQKRINNVMGRISIAGDESSWDFGFMQSLEEQLNKRGSLSPRQEEVLQQVEGRWSDEALSSRATWADDWDKDKEAKFWIALQYYHKTGYYGNIVYKYLTTAGCRCAGAPSEKEYNKLVLNKYAAGVIRNLEGEPKFPVGTPAVFRTGARSNKGKPCIVLKHGDVTTVNSHAKGAKPVQVLPIGSAAPVWTEERWLKKAKKRK
Ga0208011_100012972	F030754	GAGG	MSRTPKGNNASALANGNRLAADSTHGVTCSFAGGCRVFDPNISKDHEGRWHCERHGGANNHARANAKDDDCRDGLPGAERRARFARVRAKQRKARTFAGHIPSFLDPRPVAAQPKASKPAPKVQAKSQKQLRREAAMAELGLSEADIMKFVEIN