Scaffold Ga0208011_1000125

Overview

Basic Information

• Taxon OID: 3300025096
• Scaffold ID: Ga0208011_1000125
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33511
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (19.15%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -11.499
  • Long. (^o): -81.405
  • Depth (m): 120

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008723	Metagenome / Metatranscriptome	329	Y
F071631	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208011_100012536	F071631	N/A	MERTNLSLEIRIFICFILTIFYVSYVVKSNKDNLPKTVTVQEKVLEGFEIRIVNDHANERLEVTNTLGQALSYIERYSMHHDDLIAFDLSTGAMVASSGEGVGVIHTGYID
Ga0208011_10001257	F008723	N/A	MATTIQNFFTRAASKQFSRDFLFRVRQIDLIGGIRFDGEDDLVYARTASLPGRNIDNVNVNYFGQVFQVPGRATYANAEGYSIEFYHDENCELRTKMEAASRAVFNNETSTGAYGMPGEESVINLVQIDKNLNDVRNIELVGASIREIGDIEYSIAEGTGEVLNFSTTFAYHFYRDFS