Scaffold Ga0208011_1000110

Overview

Basic Information

• Taxon OID: 3300025096
• Scaffold ID: Ga0208011_1000110
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37235
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (46.30%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -11.499
  • Long. (^o): -81.405
  • Depth (m): 120

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001215	Metagenome	746	Y
F008401	Metagenome	334	Y
F023840	Metagenome	208	Y
F039113	Metagenome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208011_100011013	F039113	N/A	MDTSLREIKAIRDSLAGIDVSLQLLAAQRDKEHRTTAFLSKRSMCQRLNIPAVALDRLIHQGIASGGKSGLVEGKHFCKLDPEERNSSKFLYDPHAIINSAWSNFQHV
Ga0208011_10001103	F001215	N/A	MASTSTNKQPLMVDRPFLRGARFTSGSTTVTNQGNPTFSNLVQLVRVGDIPSEDGGLVEDLWVVSNEGYPDTAGIYSAAFGVYLYAPDQAAPSSSSSLLLGKFEVGLSGSTEGLIQRVELPATIAPTPRTGDTNLARPIELGKSEAMYLEKGYILCIGYYGNGPAAVSGGLSASGLSIFAQGGFY
Ga0208011_10001106	F008401	N/A	MDSSRLLTIAQTAELLNCSAGFVRKRIALAEANQPGGWPKGIFVNLQPNGAKSLYRVNQDALQKYLNGSESPAEEEACSLGSVLSSM
Ga0208011_10001107	F023840	GGAG	MDPQDTCVRVGLSLEDDLTLTRVKKKAYSLKGDARDQYLWKTIFRFVCRERAYKSVMQEIGVVVDTNVDLFGDDERYNTIDAA